User Guide
PEtab-GUI
Installation
From PyPI
From GitHub
From a local copy
Usage
Examples
Features
PEtab-GUI Tutorial
Introduction
Getting Started
Installation
Launching the Application
The Main Window
Quick Start: Your First PEtab Problem
Step 1: Launch PEtab-GUI
Step 2: Create the SBML Model
Step 3: Import Measurement Data
Step 4: Define the Observable Formulas
Step 5: Review Auto-Generated Conditions
Step 6: Configure Parameters for Estimation
Step 7: Visualize Your Measurements
Step 8: Run a Simulation
Step 9: Save Your Project
Congratulations!
Opening an Existing PEtab Problem
Creating/Editing a PEtab Problem
Creating/Editing an SBML Model
Specifying Measurements
Importing Matrix-Format Measurement Data
Understanding Matrix Format
Step-by-Step: Importing Matrix Data
Common Matrix Import Scenarios
Troubleshooting Matrix Import
Tips for Successful Matrix Import
Defining Observables
Setting Up Experimental Conditions
Setting Up Parameters
Validation and Inspection
Visualization and Simulation
Linting
Advanced Features
Filtering
Find and Replace
Multi-Cell Editing
Help Mode / Tutorial Mode
Customizable Table Layout
Undo and Redo
Recent Files
Saving Your Project
Additional Resources
Next Steps
Parameter Estimation with pyPESTO
Model Simulation with AMICI
Model Simulation with COPASI
Parameter Estimation with PEtab.jl
Parameter Estimation with Data2Dynamics
Contribute to the Benchmark Collection
Additional Resources
Development
GitHub Repository
Contributing
Development Setup
Building the documentation
Filing an Issue
PEtab-GUI
Index
Index